GgaEX0008181 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9338287-9338720:+
Coord C1 exon
chr12:9338287-9338331
Coord A exon
chr12:9338454-9338489
Coord C2 exon
chr12:9338620-9338720
Length
36 bp
Sequences
Splice sites
3' ss Seq
CATCCTTCCCTCCTACACAGGGC
3' ss Score
10.42
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGCCTCCCAGGAGAGAGGGGTCTGGCTGGCCCTGAGGGGAAGCCG
Seq A exon
GGCCCGCAGGGCTTTAGAGGGCCCCCTGGCCCCTCA
Seq C2 exon
GGCATGCCAGGTTTCCCCGGTGTGCTGGGCCGCCCGGTAGGTGTTTGTCCCCAGCATGTCACTGTCCCCCTGGCTCCTGCTAGGTGTGTGCTAGGCATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'67-72,'67-71,68-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.2=100)
A:
PF0139113=Collagen=FE(16.7=100)
C2:
PF0139113=Collagen=FE(12.0=100),PF0139113=Collagen=FE(18.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGGGGTCTGGCTGG
R:
TAGCACACACCTAGCAGGAGC
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]