GgaEX0008253 @ galGal3
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14580743-14582438:-
Coord C1 exon
chr8:14582385-14582438
Coord A exon
chr8:14581181-14581450
Coord C2 exon
chr8:14580743-14580890
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCCCCCCTTTTTAGTGC
3' ss Score
11.52
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGTCCTAAACGTTCATCCAAAGATGAGGAACCCAG
Seq A exon
TGCCAGCCATAGTGGCACCTTACTTCCAGCCAAGAGGTGGGCAGGCATACAGGCAGCTGTCTTCAGAGCTGATAGCAAGCTTGTTCTGTAGATCATCCATCGGGATGCATATGAGTGGTATGATTGGCATGTTCCACCCTCAAGACTACCAAGTACATCATCTCTGCAACAAGTTCAGCCTCCAAGCCTAGGGACGTATGTATCCGTTCCCAAGCTCAGGCCTCTCAGTTGGCAGCTTAGGAGATACCACTATACTACAGGGCTTTCCAG
Seq C2 exon
GTTTACTTCATGTATTGCCTTTTTTAACATCCTTAACGAGCTGAATGACTATGCAGGACAACGTGAAGTAGTTGCAGAAGAAATGGGACACAGAGTCTATGGAGAATTAATGAGATACTCACATGATCTAAAAACTGAGAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.127 A=0.167 C2=0.060
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.6=100)
A:
PF0061118=FCH=PD(23.8=64.5)
C2:
PF0061118=FCH=PD(30.4=56.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGTCCT
R:
TCTCTCAGTTTTTAGATCATGTGAGT
Band lengths:
196-466
Functional annotations
There are 0 annotated functions for this event