HsaEX0026122 @ hg19
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:93987639-93989048:+
Coord C1 exon
chr1:93987639-93987692
Coord A exon
chr1:93988503-93988648
Coord C2 exon
chr1:93988901-93989048
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATAGCAAAATTGTTCTGTAGATC
3' ss Score
4.16
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGCCCCAAACGTTCATCCAAAGATGAAGAGCCACG
Seq A exon
ATCAGCCATCGAGATGCATTTGGCAAGCACATCATCTCTGCAACAGGTTCAGCTACCAAGCCTAGGAATCCAACCAAGTTCATTCCCAAGCTCAGGCCAGTCAGTTGGCAACTTAAGAGATTCCAGTATGCCAAAAGAGCCTGCAG
Seq C2 exon
GTTTACCTCGTGTGTAGCCTTTTTTAATATCCTTAATGAGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAAGAAATGGCGCACAGAGTGTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-'2-4,'2-3,3-4
Average complexity
S*
Mappability confidence:
86%=100=75%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.620 C2=0.056
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(21.7=100),PF049318=DNA_pol_phi=FE(17.0=100),PF0765111=ANTH=FE(18.2=100)
A:
PF0061118=FCH=PD(21.7=36.0),PF049318=DNA_pol_phi=PD(38.7=82.0),PF0765111=ANTH=PD(35.4=70.0)
C2:
PF0061118=FCH=PD(30.1=56.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTTAAGAAGTACTGCCCCA
R:
TTCTTTCAGTTTTCAGATCATGAGCA
Band lengths:
194-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)