MmuEX0019449 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122272513-122273862:-
Coord C1 exon
chr3:122273809-122273862
Coord A exon
chr3:122272912-122273047
Coord C2 exon
chr3:122272513-122272660
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTGAGTGGTATGATTGGCAGGTT
3' ss Score
3.25
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGTCCCAAACGCTCCTCCAAAGATGAAGAGCCAAG
Seq A exon
GTTCTGTCCTCGAGAACAAGCGCACCATCTCTGCAACAGGCTCAGCTGCCAAGCCTAGGAATCCACCCAGTGATTCCCAAGCTAAGGCCAGTCAGTTGGCAACCTAAAGATTCCACTATGTCAAAAGAGCCTGCAG
Seq C2 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'8-8,'8-7,9-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(22.8=100),PF115563=EBA-175_VI=FE(33.3=100)
A:
PF0061118=FCH=PD(19.0=75.0),PF115563=EBA-175_VI=PD(31.5=85.0)
C2:
PF0061118=FCH=PD(30.4=56.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGTCCCA
R:
CATTTTTCTTTCCGTTTTCAGATCA
Band lengths:
202-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: