HsaEX0026122 @ hg38
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93522082-93523491:+
Coord C1 exon
chr1:93522082-93522135
Coord A exon
chr1:93522888-93523091
Coord C2 exon
chr1:93523344-93523491
Length
204 bp
Sequences
Splice sites
3' ss Seq
GGCACTTCACTTCCATTCAGGAT
3' ss Score
6.79
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGCCCCAAACGTTCATCCAAAGATGAAGAGCCACG
Seq A exon
GATATGGGCAGGCATACAGGCAGCTGTGTCCAGAGCTGATAGCAAAATTGTTCTGTAGATCAGCCATCGAGATGCATTTGGCAAGCACATCATCTCTGCAACAGGTTCAGCTACCAAGCCTAGGAATCCAACCAAGTTCATTCCCAAGCTCAGGCCAGTCAGTTGGCAACTTAAGAGATTCCAGTATGCCAAAAGAGCCTGCAG
Seq C2 exon
GTTTACCTCGTGTGTAGCCTTTTTTAATATCCTTAATGAGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAAGAAATGGCGCACAGAGTGTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942_MULTIEX1-3/4=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.4=100)
A:
PF0061118=FCH=PD(18.8=75.0)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Inclusion Isoform:
ENST00000271234fB2785
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGGTTAAGAAGTACTGCCCC
R:
TTCTTTCAGTTTTCAGATCATGAGCA
Band lengths:
196-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development