RnoEX0036534 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226719307-226720544:-
Coord C1 exon
chr2:226720491-226720544
Coord A exon
chr2:226719705-226719934
Coord C2 exon
chr2:226719307-226719454
Length
230 bp
Sequences
Splice sites
3' ss Seq
AATGGTACATTTCCATTCAGGAT
3' ss Score
7.01
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AAATTTGGTTAAGAAGTACTGTCCCAAACGCTCGTCCAAAGATGAAGAGCCAAG
Seq A exon
GATGTGGGCAGGCATACAGGCAGCTGTATCCAGAGCTGATAGCAAAGTTCTGTAGCTCCGCTATCAAGATGCACTTGAGTGGTATGATTGGCAGGTTCTGTCCTCGAGAACAAGCACATCATCTCTGCAACAGGTTCAGCTCCAAGCCTAGGAATCCACCCAAGTGATTCCCAAGCTCAGGCCAGTCAGTTGGCAACCTAAAGAGTCCACTATGTCCAAAGAGCCTGCAG
Seq C2 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCACACAGAGTATATGGTGAACTAATGAGATATGCCCATGACCTGAAAACGGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.4=100)
A:
PF0061118=FCH=PD(18.8=78.9)
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Inclusion Isoform:
ENSRNOT00000055669fB5647
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTGGTTAAGAAGTACTGTCCCA
R:
TCTTTCCGTTTTCAGGTCATGGG
Band lengths:
196-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]