HsaEX0026123 @ hg38
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93522082-93524323:+
Coord C1 exon
chr1:93522082-93522135
Coord A exon
chr1:93523344-93523491
Coord C2 exon
chr1:93524261-93524323
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTGAAATGTTTTTGCCAGGTT
3' ss Score
6.6
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGCCCCAAACGTTCATCCAAAGATGAAGAGCCACG
Seq A exon
GTTTACCTCGTGTGTAGCCTTTTTTAATATCCTTAATGAGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAAGAAATGGCGCACAGAGTGTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
Seq C2 exon
CATCTGCAAGAAGGACGAAAAGCTCAACAATATCTTGACATGTGCTGGAAACAGATGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942_MULTIEX1-4/4=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.048
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.4=100)
A:
PF0061118=FCH=PD(30.1=56.0)
C2:
NO
Main Skipping Isoform:
ENST00000271234fB2785
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGCCCC
R:
ATCCATCTGTTTCCAGCACATGT
Band lengths:
114-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development