BtaEX0014842 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50114951-50146915:-
Coord C1 exon
chr3:50146800-50146915
Coord A exon
chr3:50124825-50124972
Coord C2 exon
chr3:50114951-50115055
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATTTTTAATGTTTTTGTCAGGTT
3' ss Score
7.55
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GATCAGTTCGACAGCTTAGACAAGCATACACAATGGGGAATTGACTTCTTGGAAAGATATGCCAAATTTGTTAAAGAGAGGATAGAAATTGAACAGAACTATGCGAAACAATTGAG
Seq A exon
GTTTACTTCGTGTATAGCCTTTTTTAACATCCTTAACGAGTTAAATGACTATGCAGGACAGCGAGAAGTAGTAGCAGAAGAAATGGCCCACAGAGTTTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
Seq C2 exon
AGTAAAAAGAAATTTGAAAGAGAATGTAGAGAGGCAGAGAAGGCACAACAGAGTTACGAAAGATTGGATAATGACACGAATGCAACCAAGGCAGATGTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383_MULTIEX1-2/9=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.714
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.9=100)
A:
PF0061118=FCH=PD(30.1=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGTTCGACAGCTTAGACA
R:
TTCAACATCTGCCTTGGTTGCA
Band lengths:
218-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development