GgaEX1025320 @ galGal4
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12829964-12832115:-
Coord C1 exon
chr8:12832062-12832115
Coord A exon
chr8:12830420-12830567
Coord C2 exon
chr8:12829964-12830026
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTGTATGTGCTCTCTGTCAGGTT
3' ss Score
9.59
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGTCCTAAACGTTCATCCAAAGATGAGGAACCCAG
Seq A exon
GTTTACTTCATGTATTGCCTTTTTTAACATCCTTAACGAGCTGAATGACTATGCAGGACAACGTGAAGTAGTTGCAGAAGAAATGGGACACAGAGTCTATGGAGAATTAATGAGATACTCACATGATCTAAAAACTGAGAGAAAAATG
Seq C2 exon
CATCTTCAGGAAGGACGAAAGGCTCAACAGTATCTGGACATGTGCTGGAAACAGATGGATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'8-10,'8-7,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.290
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.6=100)
A:
PF0061118=FCH=PD(30.4=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGTCCT
R:
ATCCATCTGTTTCCAGCACATGT
Band lengths:
114-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]