DreEX6048931 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15013173-15019101:+
Coord C1 exon
chr8:15013173-15013223
Coord A exon
chr8:15018811-15018958
Coord C2 exon
chr8:15019039-15019101
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTATATTGTCTTCTTGCAGGTT
3' ss Score
11.32
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GAGTTTGGTTAAGAAGTATTGCCCAAAGCGCTCCAAAGACGATGAGCCCAG
Seq A exon
GTTCACGTCTTGTCTGTCATTCTACGCCATCCTGAATGAGCTGAATGACTATGCTGGTCAGCGAGAGGTTGTTGCAGAGGAGATGGGCCACAAAGTGTATGGAGAGCTCATGAGATACTCACAAGACCTGAAGGGAGAGAGGAAACAT
Seq C2 exon
CATCTTCAGGAGGGACGGAAGGCCCAGCAGTATCTAGACCAGTGCTGGAAACACATGGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.190
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(18.5=100)
A:
PF0061118=FCH=PD(30.4=56.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGGTTAAGAAGTATTGCCCA
R:
ATTGTCCATGTGTTTCCAGCACT
Band lengths:
114-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]