MmuEX6073848 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122271671-122273862:-
Coord C1 exon
chr3:122273809-122273862
Coord A exon
chr3:122272513-122272660
Coord C2 exon
chr3:122271671-122271733
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATATGTTTTGTCAGGTT
3' ss Score
8.56
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGTCCCAAACGCTCCTCCAAAGATGAAGAGCCAAG
Seq A exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATG
Seq C2 exon
CATCTCCAAGAAGGACGAAAAGCTCAACAATACCTTGACATGTGTTGGAAACAGATGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.048
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(22.8=100),PF115563=EBA-175_VI=FE(33.3=100)
A:
PF0061118=FCH=PD(30.4=56.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGTCCCA
R:
ATCCATCTGTTTCCAACACATGTCA
Band lengths:
114-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: