GgaEX0008873 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6962097-7011823:-
Coord C1 exon
chr7:7011762-7011823
Coord A exon
chr7:6991467-6991538
Coord C2 exon
chr7:6962097-6962216
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTTTGTTTCTTTAGGTG
3' ss Score
11.66
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTGCCGCTGCCGCCCGAGGTGCGCGAGAGCCTGGCGGAACTGGAGCTGGAGTTGTCGGAAG
Seq A exon
GTGATATCACTCAGAAAGGCTATGAAAAGAAAAGAGCAAAGCTGTTAGCACGTTACATACCACTAATTCAAG
Seq C2 exon
GTGTGGATCCATCCCTGCAAGCAGAAAACAGAGTCCCAGGCACCTCACAAGCCACTGCTGTTGTGTCTAAACAGCAGAAATCGCATTCCACAAACTCAAGGGATGAGCGTTTCCGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'0-7,'0-3,4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064646=DMAP_binding=PU(57.4=97.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCTGGCGGAACTGG
R:
GGAAACGCTCATCCCTTGA
Band lengths:
151-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]