BtaEX6004251 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147856757-147883800:+
Coord C1 exon
chr1:147856757-147856847
Coord A exon
chr1:147877172-147877243
Coord C2 exon
chr1:147883681-147883800
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTATTGTTGTTTTAGGTG
3' ss Score
11.79
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGGCCGAGCGCGGGTGCCCGCTGGAGGCGGTGCAGCTGCCCGCTGAGGTGCGGGAGAGCCTGGCCGAGCTGGAGCTGGAGCTGTCGGAAG
Seq A exon
GTGACATCACTCAAAAAGGATATGAAAAGAAAAGGGCAAAGCTGCTTGCACGCTGCGTACCCCTCATTCAAG
Seq C2 exon
GAGTAGACCCCTCCCTGCAAGTGGAGAATAGCATCCTTGGGCCCGCACAAGCCTCGGCCCCCGCGCCCAAGCAGCCCAAGCCGCGGCCCAGCAACGCCCGGGACGAGCGCTTCCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.240 C2=0.878
Domain overlap (PFAM):
C1:
PF051207=GvpG=PU(46.8=71.0),PF064646=DMAP_binding=PU(19.1=71.0)
A:
PF051207=GvpG=FE(51.1=100),PF064646=DMAP_binding=FE(20.9=100)
C2:
PF051207=GvpG=PD(0.1=0.0),PF064646=DMAP_binding=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTGCGGGAGAGCC
R:
TGACCGGAAGCGCTCGTC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]