MmuEX0014690 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76319467-76345291:-
Coord C1 exon
chr10:76345107-76345291
Coord A exon
chr10:76327702-76327773
Coord C2 exon
chr10:76319467-76319586
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCCCATTGTTGTAGGTG
3' ss Score
10.76
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAAGCAGCCCCGGCCGCGCCCCGCCCGCTGCCGGCTGCGGGCGGCCGCTGCGGGTCTGCAGGCCCCGGTTGGGGGAACGCCTGAGCCACCGGCCATGGCCGACCGCGGATGCCCTCTGGAGGCGGCGCCGCTGCCCGCCGAGGTGCTCGAGAGCCTGGCGGAGCTGGAGCTGGAGCTGTCCGAAG
Seq A exon
GTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGCTCGGTACATCCCCCTCATTCAAG
Seq C2 exon
ATGTTCACACGGAAGCCGTGCAAGCAGCTTTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAAGAGACGCTCCGCCCTTGTGCACTCCTCCGTTGAGACCTACACGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'0-3,'0-1,3-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.011 C2=0.864
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(19.3=71.0),PF051207=GvpG=PU(45.7=67.7)
A:
PF064646=DMAP_binding=FE(51.1=100),PF051207=GvpG=FE(44.4=100),PF064646=DMAP_binding=PU(12.1=16.0)
C2:
PF064646=DMAP_binding=PD(0.1=0.0),PF051207=GvpG=PD(14.8=19.5),PF064646=DMAP_binding=PD(84.8=68.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGATGCCCTCTGGAG
R:
AACGGAGGAGTGCACAAGGG
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types