RnoEX0027925 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13044104-13067241:+
Coord C1 exon
chr20:13044104-13044194
Coord A exon
chr20:13060821-13060892
Coord C2 exon
chr20:13067231-13067241
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCACTGTTGTTGTAGGTG
3' ss Score
9.93
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
ATGGCCGACCGCGGATGCCCTCTGGAGGCGGCGCCGCTGCCCGCCGAGGTGCTCGAGAGCCTGGCGGAGCTGGAGCTGGAGCTGTCCGAAG
Seq A exon
GTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGCTCGTTATATCCCCCTCATTCAAG
Seq C2 exon
GAGTGGACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.160 C2=0.250
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(19.8=71.0),PF051207=GvpG=PU(44.7=67.7)
A:
PF064646=DMAP_binding=FE(21.6=100),PF051207=GvpG=FE(51.1=100)
C2:
PF064646=DMAP_binding=FE(2.7=100),PF051207=GvpG=PD(2.1=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]