DreEX0026983 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:629407-695564:-
Coord C1 exon
chr9:695250-695564
Coord A exon
chr9:636788-636859
Coord C2 exon
chr9:629407-629526
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTTTATAGGTG
3' ss Score
14.82
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGTTTCTCTTTGTTTCTCGGAGAATCAGACGGAAATCTGCCGGCATGAGTCCGGCTTGAAGAAGGGAAGGGTGTGGTGTGGTGTGGACCCGCACCAGCGCGCGTCTCCGGCGGTCTGTATGCGCGCGCCCCGCCGCTCCGCTCCGCACATCTGCCCGCGGTGAGAGACGCGACGCCCCGAGCCGCAGCAGCAGCAGCATGGCCGAGCGCGGATCCGGAGTGCTGATGATGCTGCTGGAGCCCCCGGCCCTCGCCATGACCCTGCCGGCGGAGGTGCGCGAGAGGCTGGCGGAGCTGGAGCTGGAGCTGTCCGAGG
Seq A exon
GTGACATCACGCAGAAAGGCTATGAGAAGAAAAGAGGGAAATTACTGGCGCCCTACATTCCCCAGATACAAG
Seq C2 exon
GTGTAGATCCGTCTCTTCAGATCGATCACAGGATTCAGTCTTCAGCACCGGCGGCTCATCCGGCCTCCAAACACAACAAACCTCGGCTGGCCAACTCCAGGGATGAGCGCTTCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'0-1,'0-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.320 C2=0.902
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(19.1=55.0),PF051207=GvpG=PU(50.0=52.5)
A:
PF064646=DMAP_binding=FE(20.9=100),PF051207=GvpG=PD(47.6=80.0)
C2:
PF064646=DMAP_binding=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGATGATGCTGCTGGAG
R:
GTTTGTTGTGTTTGGAGGCCG
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]