DmeEX6013740 @ dm6
Exon Skipping
Gene
FBgn0024806 | DIP2
Description
The gene DISCO Interacting Protein 2 is referred to in FlyBase by the symbol DmelDIP2 (CG7020, FBgn0024806). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is 3L:250229..257954. Its molecular function is described by: catalytic activity; protein binding. The biological processes in which it is involved are not known. 13 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; fertile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult female stages.
Coordinates
chr3L:256649-257954:-
Coord C1 exon
chr3L:257553-257954
Coord A exon
chr3L:257130-257201
Coord C2 exon
chr3L:256649-257056
Length
72 bp
Sequences
Splice sites
3' ss Seq
AATTCCATCTGCTTTTCTAGGTG
3' ss Score
9.8
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAATAGTTATCAATTTTTCGCTAGTTCATAAAATCGATTTGTACTGCTATTTTTCTTTGTTTACTTTCATTGTGCAAATTCGTAAAAGACATTCGTAATATCGTGTTTTCTAACTAACCCAAAGTACTGGTGCTGCGCAAGTACGGATGTATTTATTTGCGTCGGCAAAATGTGAAATAGAATAAATGGCAAATCGATCGATTTTTGACAACGAAGTGGGAAAGTAGCGGTGTCTGGGTGTGTTTGTGTACTGCGACCAGCCAAAGTTTAGACGAATCCTCCAAGGAAGAGGATAGAACAAAACCCTAAAGCCACACTTTTCATCTGCCATGGAGCACACTGCCTCGCTGCCTGGCTACGTCCGCGAGAAGCTCGCCGAACTGGACTTAGAGCTGTCGGAAG
Seq A exon
GTGACATTACGCAGAAAGGCTACGAAAAGAAAAGGGCGAAGCTGTTGCAGCCGTTCCTAAAGAAGCCAGAAG
Seq C2 exon
GCGATAAAGTGAAAAGTACGCCGCCACCGCCATACTACAACGTTAAAAATGCCAACAACAGCACCAACCACGGAAACATCAATAACGACGGCGTCATTGTGTCCAGCGAGGGCTACAGTTATGTGACTGAAGTGCCCTCCCTGTCCTCCTCGCAGCAAAGACATTCCAAAAAAATTGACTTCCATCAGCAAGCCGCCATGAGCTTGTCATCGGCACCACAGAGCGGAAATGCTGGGGCTCCTGGCTACGAAAATATGCGACCGCAGGGTGGAGCAGTCGGCGATCCCGGGTATCAGAACACTCGCGAACCAAGTGCTTTTCAGAACCAACAGTCAACTAATAATAGTCAGCATCGTCAACGACGCACACAGCGCAAAGTAACGCACAATGAGAAACGTTATCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0024806-'1-1,'1-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.760 C2=0.956
Domain overlap (PFAM):
C1:
PF051207=GvpG=PU(46.0=92.0),PF064646=DMAP_binding=PU(19.5=88.0)
A:
PF051207=GvpG=FE(48.0=100),PF064646=DMAP_binding=FE(21.2=100)
C2:
PF051207=GvpG=PD(4.0=1.5),PF064646=DMAP_binding=PD(58.4=48.2),PF064646=DMAP_binding=PU(56.2=29.9)
Main Inclusion Isoform:
FBpp0072420
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0293868, FBpp0304418, FBpp0304419, FBpp0304420
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACACTTTTCATCTGCCA
R:
GATGTTTCCGTGGTTGGTGCT
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)