DreEX6023043 @ danRer10
Exon Skipping
Gene
ENSDARG00000016348 | dip2bb
Description
DIP2 disco-interacting protein 2 homolog Bb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-100729-4]
Coordinates
chr6:39584541-39608198:-
Coord C1 exon
chr6:39608114-39608198
Coord A exon
chr6:39585343-39585414
Coord C2 exon
chr6:39584541-39584702
Length
72 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTCCTTTTTTTCAGGTG
3' ss Score
12.51
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGGCGGAGCGCGGTGTGGATGTGTCCGCTCTCCCGCAAGAGGTCCGGGAGCAGCTCGCTGAACTGGACCTGGAGCTGTCTGAGG
Seq A exon
GTGACATCACACAAAAGGGATACGAGAAGAAGAGGGCAAAAGTTTTAGCGCCCTACTTGGCCCAAGCGCAAG
Seq C2 exon
ATTTGGCTCCGCCTCCAGCCTATGATGAGCAGTCTCCTGGTCCAAGCTCCGCCTCTGCTCCTGAACCCGGCCCGTCAAACTCGTCGTCCTCCTCTTCTCGTCATCGGCGCACTCGGAGACCACACCGGAGCGGCGGCACTAGAGATGAGCGCTACCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016348-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(16.8=75.9),PF051207=GvpG=PU(42.9=72.4)
A:
PF064646=DMAP_binding=FE(18.3=100),PF051207=GvpG=FE(49.0=100)
C2:
PF064646=DMAP_binding=FE(41.2=100),PF051207=GvpG=PD(6.1=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCTGGAGCTGTCTGAG
R:
TGATCGGTAGCGCTCATCTCT
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]