GgaEX1019762 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:180080-213469:-
Coord C1 exon
chrLGE22C19W28_E50C23:213382-213469
Coord A exon
chrLGE22C19W28_E50C23:185647-185718
Coord C2 exon
chrLGE22C19W28_E50C23:180080-180220
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTTGATTTTAGGGG
3' ss Score
10.91
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATGGCCGAGCCGGCGGCCGCGGGTATCTCCTCGCTGCCTCGCGAGGTCCGCGAGCAGCTGGCCGAGCTGGAGCTGGAGCTCTCTGAAG
Seq A exon
GGGACATCACACAGAAGGGGTATGAGAAGAAGAGAGCAAAGCTCCTGGCTCCGTACGTCCCTCAGACACAAG
Seq C2 exon
GGGTTGATCCAGCTCTACAGAAGGAATCCAGAACTCAGACACCCACTCCATCTGCAACTCCAGCCCCAGCTCCCTCCTCATCCTCATCCAAATTTCACCGAGCCCGCTCAGGGGGAGCCAGAGATGAACGCTACCGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'0-5,'0-2,10-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF051207=GvpG=PU(41.8=76.7),PF064646=DMAP_binding=PU(17.7=73.3)
A:
PF051207=GvpG=FE(43.6=100),PF064646=DMAP_binding=FE(19.4=100)
C2:
PF051207=GvpG=PD(12.7=14.6),PF064646=DMAP_binding=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTATCTCCTCGCTGCCTC
R:
CGGGCTCGGTGAAATTTGGAT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]