DreEX0027006 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27468070-27516003:-
Coord C1 exon
chr23:27515768-27516003
Coord A exon
chr23:27469257-27469328
Coord C2 exon
chr23:27468070-27468192
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTTTTGTTCTCGCAGGTG
3' ss Score
10.52
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
TGGTGAGTCTCCAAGCATGGCGGAAGGAGTAGTTCTCCGGATGGATTGTTACTCACCTTTTAATTCACGCTTTATGCCTTGACCGGAGGATTTTGGGCTTTCGAAGTGCATTTCATCACACTTAAAACAACTTAAGCGTATTTTCGCGAAGATGGCAGACCGCGGTGTGGATTTGGCAGCTCTACCGAAAGAGGTTAGAGAGCAGTTGGCGGAGTTGGAGCTCGAGCTGTCTGAAG
Seq A exon
GTGACATCACACAGAAAGGCTATGAAAAGAAGCGAGCTAAACTGCTGGCTCCATTCGTACCACAGACCCAAA
Seq C2 exon
ATGTGGACGTGAGTATTCTTTCTACAGACTCCACCTCGAGCCCTATTACCATCCCTATTGCTGCCCCACGGCAACACAGGGCTCACCGAAGTGGAGGAACACGGGATGACCGCTATCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'0-2,'0-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=0.380 C2=0.913
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(18.6=75.9),PF051207=GvpG=PU(46.7=72.4)
A:
PF064646=DMAP_binding=FE(20.3=100),PF051207=GvpG=PD(51.1=92.0)
C2:
PF064646=DMAP_binding=FE(34.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATTTGGCAGCTCTACCG
R:
TCATCCCGTGTTCCTCCACTT
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]