HsaEX0019740 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:50898768-51034635:+
Coord C1 exon
chr12:50898768-50899023
Coord A exon
chr12:51019759-51019830
Coord C2 exon
chr12:51034507-51034635
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTTGCTATTTTAGGGG
3' ss Score
10.55
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACGTGACCTTTGCTCATGGCGGCGGCGGCGGCGGCGGCGGTGCTGGTGGTGCTCGGCGGCCGGAGCCGGATCCTGTAGCCGGGTGTGGGCCCGTGTCTGTCCGTCCCTCCTTCGGCCCCCTCTCTTGTCTTCCGGAGTGTGGCTGGCGGAGCTGGGATGGCGGAACGAGGCCTGGAGCCGTCGCCGGCCGCGGTGGCGGCGCTGCCGCCTGAAGTGCGGGCGCAGCTGGCGGAGCTGGAGCTGGAGCTCTCGGAGG
Seq A exon
GGGACATCACCCAGAAGGGCTATGAAAAGAAAAGGTCCAAACTCCTATCTCCTTACAGCCCGCAGACACAAG
Seq C2 exon
AAACTGATTCAGCAGTACAGAAAGAACTTAGAAACCAGACACCTGCTCCATCTGCAGCTCAAACTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGAGCCAGGGATGAACGATATCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=1.000 C2=0.970
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(18.3=64.7),PF051207=GvpG=PU(38.9=61.8)
A:
PF064646=DMAP_binding=FE(20.0=100),PF051207=GvpG=FE(44.4=100)
C2:
PF064646=DMAP_binding=FE(35.8=100),PF051207=GvpG=PD(14.8=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGTCTTCCGGAGTGTGG
R:
GCAGGTGTCTGGTTTCTAAGT
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)