MmuEX6056500 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100038664-100132027:+
Coord C1 exon
chr15:100038664-100038909
Coord A exon
chr15:100115845-100115916
Coord C2 exon
chr15:100131902-100132027
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTTGCTGTTTTAGGGG
3' ss Score
12.28
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGCCGGCGGCTCTCGGCGGCTGGAGCCGGATCCTGTAGCCGGGGTGTGGGCCCGCGTCAGTCCGTCCCTCCTTCGGCCCCCTCTCGTCTTCCGGAGTGTGGCTGGCGCAGCCGCGATGGCGGAGCGAGGCCTGGAGCCGTCGCCGGCCGCGGTGGCCGCGCTGCCCCCCGAGGTGCGGGCGCAGCTGGCTGAGCTGGAGCTGGAGCTGTCTGAGG
Seq A exon
GGGACATCACACAGAAAGGATATGAAAAGAAAAGGTCCAAACTTCTGTCTCCTTACAGCCCACAGACTCAAG
Seq C2 exon
AAACTGATTCCATAGGACAAAAAGAAAGAAACCAAACTCCTGCTCCCACGGCAGCTCAGACTTCTGCTCCTTCCAAGTATCACCGTTCACGTTCTGGAGGTGCGAGAGATGAGAGATACCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'3-4,'3-2,12-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(18.5=64.7),PF051207=GvpG=PU(37.5=61.8)
A:
PF064646=DMAP_binding=FE(20.2=100),PF051207=GvpG=FE(42.9=100)
C2:
PF064646=DMAP_binding=FE(35.3=100),PF051207=GvpG=PD(17.9=23.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGTCTTCCGGAGTGTGG
R:
GTGGGAGCAGGAGTTTGGTTT
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types