BtaEX6020692 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29448318-29579488:-
Coord C1 exon
chr5:29579389-29579488
Coord A exon
chr5:29468500-29468571
Coord C2 exon
chr5:29448318-29448446
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTCTTGCTATTTTAGGGG
3' ss Score
10.13
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATGGCGGAGCGAGGCCTGGAGCCCTCGCCGGCTGCGGTGGCGGCGTTGCCGCCCGAAGTGCGGGCGCAGCTGGCGGAGCTGGAGCTGGAGCTCTCGGAGG
Seq A exon
GGGACATCACACAGAAGGGATATGAAAAGAAAAGGTCAAAACTCCTGTCTCCTTACATCCCGCAGACACAAG
Seq C2 exon
AAACTGATTCATCAGTACAGAAAGAACACAGAAACCAAACACCTGCTCCATCTGCAGCTACAACTTCTGCTCCTTCTAAGTATCATCGAAGTCGATCTGGGGGAGCCAGGGATGAACGATACCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'0-4,'0-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(18.3=64.7),PF051207=GvpG=PU(38.2=61.8)
A:
PF064646=DMAP_binding=FE(20.0=100),PF051207=GvpG=FE(43.6=100)
C2:
PF064646=DMAP_binding=FE(35.8=100),PF051207=GvpG=PD(16.4=20.5)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]