MmuEX0014690 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75784235-75808036:-
Coord C1 exon
chr10:75807852-75808036
Coord A exon
chr10:75790447-75790518
Coord C2 exon
chr10:75784235-75784351
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCCCATTGTTGTAGGTG
3' ss Score
10.76
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAAGCAGCCCCGGCCGCGCCCCGCCCGCTGCCGGCTGCGGGCGGCCGCTGCGGGTCTGCAGGCCCCGGTTGGGGGAACGCCTGAGCCACCGGCCATGGCCGACCGCGGATGCCCTCTGGAGGCGGCGCCGCTGCCCGCCGAGGTGCTCGAGAGCCTGGCGGAGCTGGAGCTGGAGCTGTCCGAAG
Seq A exon
GTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGCTCGGTACATCCCCCTCATTCAAG
Seq C2 exon
GAGTAGACCCATGTCTGCAGACAGAGAATAGAATTCCCGGGCCCTTGCTGACGGCAGCTACCGCTAAACCACAGAAGTCTCGGGCTACCAACTCCAGGGATGAGCGCTTCCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.020 C2=0.775
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(19.3=71.0),PF051207=GvpG=PU(45.7=67.7)
A:
PF064646=DMAP_binding=FE(51.1=100),PF051207=GvpG=FE(44.4=100),PF064646=DMAP_binding=PU(12.1=16.0)
C2:
PF064646=DMAP_binding=FE(34.2=100),PF051207=GvpG=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGATGCCCTCTGGAG
R:
TAGCCCGAGACTTCTGTGGTT
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: