DreEX6095477 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:26944115-27047629:+
Coord C1 exon
chr24:26944115-26944535
Coord A exon
chr24:27037392-27037463
Coord C2 exon
chr24:27047519-27047629
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTTCATGCTCTTTTGCAGGTG
3' ss Score
11.44
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAACACCACACTCGCCTTGCGTCATGAGAGAGTGACAGTGAGAAAGAGAGGGAGAGACTGGAGAAACACACACACACAGCGCTCCGACCCGTGAGCTTCACCGCACTGACAGTCCACATCTTCCACTGCTGACTCCAACGGCGGAGCCCTTCAGATATGGCGGGGCTTCGTTGAGAGGGACAGAAAATCTCCCGAGTAGCACCGTTCACCGAGCAGTTTGTTTTTGGACACGCGTCTCCCGCAGCCCTCCTTATGCACCGCTGCGACTCGGAGAAACGGCAGCCGCGCTGAAAGAGTCGAAGAAAGAGGACGAGAGTGATTTTTACCCCTTTGAACGGACAATGGCGGACCGCGATGCATTGCCCCTTCCATTGGAGGTGCGGGCCAGATTGGCTGAGCTGGAGCTGGAGTTATCCGAAG
Seq A exon
GTGACATCACTCAGAAGGGATATGAGAAGAAGAGGTCAAAACTACTCGGAGCGTATCTGCCACATCCTCCAG
Seq C2 exon
GGCTAGAGGCGTCCATGGCACATGATCGCCGGCCGCCCATGGCGCCTTCCTCCGCTTCACGATACCACCGTCGGCGTTCCTCCGGCACCCGTGACGAACGCTACCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'0-3,'0-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.893 C2=1.000
Domain overlap (PFAM):
C1:
PF051207=GvpG=PU(51.2=81.5),PF064646=DMAP_binding=PU(19.3=81.5)
A:
PF051207=GvpG=PD(46.5=80.0),PF064646=DMAP_binding=FE(21.1=100)
C2:
PF064646=DMAP_binding=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCCCCTTCCATTGGAGG
R:
CTGATCGGTAGCGTTCGTCAC
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]