HsaEX0019755 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:472439-689668:-
Coord C1 exon
chr10:689494-689668
Coord A exon
chr10:486459-486530
Coord C2 exon
chr10:472439-472549
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCCTTCTCTTGCAGGTG
3' ss Score
13.67
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
Exon sequences
Seq C1 exon
CTCGGTGCGGTTCCGCCGGGCGCGAGGAGCCGCCGAGACCTCCGCCTGCGAACAAAGAGGAGGCCGTGCGGGGCGCGGCGCCCGCGGAGCATGGCGGACCGCAGCCTGGAGGGCATGGCGCTGCCCCTGGAGGTGCGGGCGCGCCTGGCCGAGCTGGAGCTGGAGCTGTCGGAAG
Seq A exon
GTGACATCACACAAAAAGGATATGAAAAGAAGAGGTCAAAGTTAATTGGAGCCTACCTTCCGCAGCCTCCGA
Seq C2 exon
GGGTGGACCAAGCTTTGCCGCAAGAACGCCGGGCTCCTGTCACTCCTTCCTCCGCCTCTCGCTACCACCGCCGACGGTCTTCAGGGTCACGAGATGAGCGCTATCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX2-4/14=C1-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.358 C2=0.866
Domain overlap (PFAM):
C1:
PF051207=GvpG=PU(55.6=86.2),PF064646=DMAP_binding=PU(23.2=75.9)
A:
PF051207=GvpG=PD(42.2=76.0),PF064646=DMAP_binding=FE(25.3=100)
C2:
PF064646=DMAP_binding=FE(32.5=100)
Main Skipping Isoform:
ENST00000634311fB13818
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACAAAGAGGAGGCCGTG
R:
CGGAGGAAGGAGTGACAGGAG
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development