MmuEX0014711 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9276528-9506689:+
Coord C1 exon
chr13:9276528-9277066
Coord A exon
chr13:9493105-9493176
Coord C2 exon
chr13:9506579-9506689
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTGTTCTCTTTCAGGTG
3' ss Score
14.89
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGAGCCCTGTGGCCGTGACCGCGGGCGGGCCCGTGATCCGGTGCCGGCCGAGCGGGGCCGGAGCCCGCGGCTGGGGGAGGCGCGCAGAGAGCCGGGCGCGAGGCCACCGCCAGGGTCGGGGCCGCGCTGAGGAGGCTGAGGAGACTGACGAGGCACTGAGGAGGCGCTGAGGAGACGCTGAGGAGGCTGACGAGGCGCTGAGGAGACTGAGGAGGCGCTGAGGAGACTGACGAGGCTGAGGAGGCTAAGGAGAAAATCCCCGCGCGCCTGCCCGCCGCCGCCCGGCCTCCCGCTCCCGCCCGCCCGCCGCCGCCTCCTCAGTGCGGCTCCTCCGGGTTCGAGTGGCGGCCGCTGAGGAGCCCTCCGTCGGCGAACAAAGAGGAGGCCGGCAGGGCGGAGGCGTCTGCGGCGAGCATGGCGGACCGCAGCCTGGAAGGCATGGCTCTCCCGTTGGAGGTGAGGGCCCGGCTGGCCGAGCTGGAGCTGGAGCTGTCGGAAG
Seq A exon
GTGACATTACACAAAAGGGATATGAAAAGAAGAGGTCAAAATTAATTGGAGCCTACCTTCCCCAGCCTCCAA
Seq C2 exon
GAGTGGACCAAGCTCTGCCTCAAGAGCGACGGGCGCCTGTCACTCCTTCCTCAGCTTCTCGATACCACCGCCGAAGGTCCTCAGGGTCTCGAGATGAACGTTATCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'0-6,'0-3,10-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.760 C2=0.974
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(19.3=75.9)
A:
PF051207=GvpG=PD(41.3=76.0),PF064646=DMAP_binding=FE(21.1=100)
C2:
PF064646=DMAP_binding=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTCGGCGAACAAAGAG
R:
TCGCTCTTGAGGCAGAGCTT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types