MmuEX0014711 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9275774-9505935:+
Coord C1 exon
chr13:9275774-9276312
Coord A exon
chr13:9492351-9492422
Coord C2 exon
chr13:9505825-9505935
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTGTTCTCTTTCAGGTG
3' ss Score
14.89
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGAGCCCTGTGGCCGTGACCGCGGGCGGGCCCGTGATCCGGTGCCGGCCGAGCGGGGCCGGAGCCCGCGGCTGGGGGAGGCGCGCAGAGAGCCGGGCGCGAGGCCACCGCCAGGGTCGGGGCCGCGCTGAGGAGGCTGAGGAGACTGACGAGGCACTGAGGAGGCGCTGAGGAGACGCTGAGGAGGCTGACGAGGCGCTGAGGAGACTGAGGAGGCGCTGAGGAGACTGACGAGGCTGAGGAGGCTAAGGAGAAAATCCCCGCGCGCCTGCCCGCCGCCGCCCGGCCTCCCGCTCCCGCCCGCCCGCCGCCGCCTCCTCAGTGCGGCTCCTCCGGGTTCGAGTGGCGGCCGCTGAGGAGCCCTCCGTCGGCGAACAAAGAGGAGGCCGGCAGGGCGGAGGCGTCTGCGGCGAGCATGGCGGACCGCAGCCTGGAAGGCATGGCTCTCCCGTTGGAGGTGAGGGCCCGGCTGGCCGAGCTGGAGCTGGAGCTGTCGGAAG
Seq A exon
GTGACATTACACAAAAGGGATATGAAAAGAAGAGGTCAAAATTAATTGGAGCCTACCTTCCCCAGCCTCCAA
Seq C2 exon
GAGTGGACCAAGCTCTGCCTCAAGAGCGACGGGCGCCTGTCACTCCTTCCTCAGCTTCTCGATACCACCGCCGAAGGTCCTCAGGGTCTCGAGATGAACGTTATCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'0-5,'0-2,1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.714 C2=0.961
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(19.3=75.9),PF051207=GvpG=PU(55.6=86.2)
A:
PF064646=DMAP_binding=FE(21.1=100),PF051207=GvpG=PD(42.2=76.0)
C2:
PF064646=DMAP_binding=FE(39.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTCGGCGAACAAAGAG
R:
TCGCTCTTGAGGCAGAGCTT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: