HsaEX0019769 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:518379-532470:-
Coord C1 exon
chr10:532399-532470
Coord A exon
chr10:530721-530888
Coord C2 exon
chr10:518379-518489
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAACTTGTTACAGCAG
3' ss Score
7.01
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGACATCACACAAAAAGGATATGAAAAGAAGAGGTCAAAGTTAATTGGAGCCTACCTTCCGCAGCCTCCGA
Seq A exon
CAGCGAATGGAGCTGCCGTGGTTCGGTGTAGACTGCAGCACAGTGAAGGAGCGCCGAGGAGAACATTCCGCTCTGCCCACATCGGGGTGTGCGACGTCCGAGAAGCTGCGGCTCGGGAGCGGGTGGCCAGCACCGCAGGGAACCGGCCTCTGTTTTACTTTCGTTTCG
Seq C2 exon
GGGTGGACCAAGCTTTGCCGCAAGAACGCCGGGCTCCTGTCACTCCTTCCTCCGCCTCTCGCTACCACCGCCGACGGTCTTCAGGGTCACGAGATGAGCGCTATCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.744 A=0.246 C2=0.963
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(21.1=100),PF051207=GvpG=PD(42.2=76.0)
A:
PF064646=DMAP_binding=PD(50.5=84.2),PF064646=DMAP_binding=PU(8.1=10.5)
C2:
PF064646=DMAP_binding=FE(32.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCACACAAAAAGGATATGA
R:
CGATAGCGCTCATCTCGTGAC
Band lengths:
178-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)