DreEX6028647 @ danRer10
Exon Skipping
Gene
ENSDARG00000025513 | dip2cb
Description
DIP2 disco-interacting protein 2 homolog Cb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-589]
Coordinates
chr2:42703150-42729836:-
Coord C1 exon
chr2:42729482-42729836
Coord A exon
chr2:42704813-42704884
Coord C2 exon
chr2:42703150-42703254
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTGTTTTTTTCAGGTG
3' ss Score
12.89
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACGGCAGCAGCAGCAGTAGCGGGCACGGTGACGGTGGCACCGCAGTGGATACACGGGCAGCTTCGCTCCTGTGCACCACTACAATCCAAGATCTGAAGGAGAAACCGTAAACCGACTAAACCCCGACCGGTGATGACGCGTTTGCAGTAACGCGACTGCTCGCTGCCTGTCCCCGCTTACACTCATGAGGTCTATTTTTGCACCGTGAAACACACGTTTGACACCGTGTGCTCGGGAGAAACAGACGCGCGAGGCTCGGATGTGTTGGAGTCGCAATGGCAGACCGTGATTCGTTACCGCTGCCGTTGGAGGTGCGCGCGCGGCTGGCGGAGCTCGAGCTGGAGCTGTCGGAGG
Seq A exon
GTGATATCACCCAGAAGGGCTACGAGAAGAAAAGATCCAAACTTTTACAAGCATACCTACCTCATACACCAG
Seq C2 exon
GAGCAGAACGGCGCATCCCCGTAACACCATCTTCATCGTCTTCCTCATCCTCACGTTATCAACGCAGACGGTCCACTGGGTCAAGGGATGAACGTTACCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025513-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.880 C2=1.000
Domain overlap (PFAM):
C1:
PF051207=GvpG=PU(46.9=85.2),PF064646=DMAP_binding=PU(19.6=81.5)
A:
PF051207=GvpG=FE(49.0=100),PF064646=DMAP_binding=FE(21.4=100)
C2:
PF051207=GvpG=PD(2.0=2.8),PF064646=DMAP_binding=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCAGACCGTGATTCGT
R:
CGTTCATCCCTTGACCCAGTG
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]