MmuEX0014721 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9493105-9506689:+
Coord C1 exon
chr13:9493105-9493176
Coord A exon
chr13:9494834-9495001
Coord C2 exon
chr13:9506579-9506689
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAACTTGTTACAGCAG
3' ss Score
7.01
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGACATTACACAAAAGGGATATGAAAAGAAGAGGTCAAAATTAATTGGAGCCTACCTTCCCCAGCCTCCAA
Seq A exon
CAGCGAATGGAGCTGCCGTGGTTCGGTGTAGACTGCAGCCCGGTGAAGGCGTGCCGAGGAGACCCTTCCGCTCTGCCCACATCGGGGTGTGCGACATCCGAGAAGCTGCGGCCCGGGAGCGGGCGGCCAGTGCAGCGGGGAACCGGCCTCTGTTTTACTTTCGTTTCG
Seq C2 exon
GAGTGGACCAAGCTCTGCCTCAAGAGCGACGGGCGCCTGTCACTCCTTCCTCAGCTTCTCGATACCACCGCCGAAGGTCCTCAGGGTCTCGAGATGAACGTTATCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.211 C2=0.974
Domain overlap (PFAM):
C1:
PF051207=GvpG=PD(41.3=76.0),PF064646=DMAP_binding=FE(21.1=100)
A:
PF064646=DMAP_binding=FE(32.9=100)
C2:
PF064646=DMAP_binding=FE(32.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATTACACAAAAGGGATATGA
R:
CGATAACGTTCATCTCGAGACCC
Band lengths:
178-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types