GgaEX0009491 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9981688-9995626:-
Coord C1 exon
chr2:9995526-9995626
Coord A exon
chr2:9992072-9992239
Coord C2 exon
chr2:9981688-9981798
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAACTTGTTACAGCAG
3' ss Score
7.01
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
TATTGATTTTCCTTTCCTTTTCTTGGCAGGTGACATCACACAGAAGGGATATGAAAAGAAGAGATCAAAATTAATTGGGGCCTACCTGCCACAGCCTCCCG
Seq A exon
CAGCGAATGGAGCTGCCGCGGTACGGTGTAGACTGCAACACAGTGAAGGAGCTGCCAGAAGAATGCTCCGCACTGCCAACATTGGGGTCTGTGACATCCGGGAAGCGGCCGCTAGAGAGAGAGCAGCCAGCACGGCAGGAAACCGGCCTCTCTTTTATTTTCGTTTTG
Seq C2 exon
GAGTGGACCAGGCATTACCACAAGAACGTCGAACTCCGGTTACTCCGTCCTCTTCCTCCCGATATCACCGCCGCAGGTCCTCAGGGTCACGGGATGAGCGCTACAGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064646=DMAP_binding=PU(53.7=97.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATTTTCCTTTCCTTTTCTTGGCA
R:
CCGATCTGTAGCGCTCATCC
Band lengths:
210-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]