RnoEX0027975 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63635086-63657910:+
Coord C1 exon
chr17:63635086-63635164
Coord A exon
chr17:63636654-63636821
Coord C2 exon
chr17:63657800-63657910
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAACTTGTTACAGCAG
3' ss Score
7.01
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTTTCAGGTGACATTACACAAAAGGGATATGAAAAGAAGAGGTCAAAATTAATTGGAGCCTACCTTCCCCAGCCTCCAA
Seq A exon
CAGCGAATGGAGCTGCCGTGGTTCGGTGTAGACTGCAGCCCGGTGAAGGCGTTCCGAGGAGACCTTTCCGCTCTGCCCACATCGGGGTGTGCGACATCCGAGAAGCTGCAGCCCGGGAGCGGGCGGCCAGTGCAGCGGGGAACCGGCCTCTGTTTTACTTTCGTTTCG
Seq C2 exon
GAGTGGACCAAGCTCTGCCTCAAGAGCGACGTGCACCCGTCACTCCTTCCTCAGCTTCTCGCTACCACCGCCGAAGATCCTCAGGGTCTCGAGATGAACGTTATCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=0.351 C2=0.842
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(17.3=96.3)
A:
PF064646=DMAP_binding=FE(37.3=100)
C2:
PF064646=DMAP_binding=FE(24.7=100)
Main Skipping Isoform:
ENSRNOT00000020634fB4177
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGACATTACACAAAAGGGA
R:
TGACCGATAACGTTCATCTCGA
Band lengths:
186-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]