GgaEX0013758 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18766420-18774792:-
Coord C1 exon
chr7:18774667-18774792
Coord A exon
chr7:18774012-18774190
Coord C2 exon
chr7:18766420-18766510
Length
179 bp
Sequences
Splice sites
3' ss Seq
AGCATTTTTCTTCTTCCTAGCTG
3' ss Score
6.7
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCACCGTTACCGGAACAAGAGGGACCGTCAGCTGGTACAGTTGGGACGTTTGAACTGATGAGCTCCAAAGACCTGGCACATCAGATGACAATTTACGACTGGGAGCTCTTCAACTGTGTGCATGAG
Seq A exon
CTGGAACTGATCTATCACACTTTTGGAAGGCATAATTTTAAAAAGACCACGGCAAATCTGGATCTATTTTTAAGAAGATTTAATGAAATTCAGTTCTGGGTGGTCACTGAGATTTGTCTTTGCTCTCAACTCAGCAAGCGTGTGCAGCTATTGAAGAAATATATTAAGATAGCTGCCCA
Seq C2 exon
CTGTAAAGAATACAAAAATCTGAATTCCTTTTTCGCTATTATTATGGGACTGAGTAATGTTGCCGTGAGCCGTCTGTCACTGACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'35-37,'35-36,36-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(13.0=57.1)
A:
PF0061714=RasGEF=FE(31.9=100)
C2:
PF0061714=RasGEF=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTACCGGAACAAGAGGGAC
R:
CTCCCATGTCAGTGACAGACG
Band lengths:
213-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]