RnoEX0074053 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58900622-58904354:+
Coord C1 exon
chr3:58900622-58900747
Coord A exon
chr3:58901152-58901330
Coord C2 exon
chr3:58904264-58904354
Length
179 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCCTCTCTGTTCTAGCTG
3' ss Score
11.44
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACTCCCTTGCCAGAACAGGAGGGCCCGACCACTGGGACAGTGGGGACGTTTGAACTGATGAGCTCGAAAGACTTGGCGTACCAGATGACAACGTATGACTGGGAACTCTTCAACTGTGTGCACGAG
Seq A exon
CTGGAGCTAATCTACCACACATTTGGAAGGCATAATTTTAAAAAGACCACAGCAAACTTGGATTTGTTCCTGAGGAGATTTAATGAAATTCAGTTTTGGGTTGTCACTGAGATCTGCCTTTGTTCCCAGCTCAGCAAACGTGTTCAGCTTTTGAAAAAATTTATCAAGATAGCGGCTCA
Seq C2 exon
CTGCAAGGAGTACAAAAACCTGAATTCCTTCTTCGCCATCGTCATGGGGCTCAGTAACGTGGCTGTGAGCCGCCTGGCATTAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(13.0=57.1)
A:
PF0061714=RasGEF=FE(31.9=100)
C2:
PF0061714=RasGEF=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCCTTGCCAGAACAGGAG
R:
CTCCCATGTTAATGCCAGGCG
Band lengths:
217-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]