GgaEX0014619 @ galGal3
Exon Skipping
Gene
ENSGALG00000009877 | KCNH1
Description
NA
Coordinates
chr3:23479556-23491401:+
Coord C1 exon
chr3:23479556-23479634
Coord A exon
chr3:23490925-23491048
Coord C2 exon
chr3:23491295-23491401
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGATGTGTTCTTTCAAACAGATA
3' ss Score
10.43
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GCGACTATTGCCGGGGGAAAGAGAGGGCTGGTGGCGCCTCAGAACACGTTCCTGGAGAACATCGTGCGAAGGTCTAACG
Seq A exon
ATACTAATTTTGTCTTGGGCAATGCCCAGATAGTGGATTGGCCCATTGTGTACAGCAACGATGGATTTTGCAAGCTATCAGGATATCACAGAGCAGAAGTTATGCAAAAAAGCAGCACCTGCAG
Seq C2 exon
TTTTATGTATGGAGAGCTGACAGACAAAGATACAATTGACAAAGTCCGGCAGACATTTGAGAACTATGAGATGAATTCCTTTGAAATCCTGATGTACAAGAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009877-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(35.8=90.5)
C2:
PF134261=PAS_9=FE(34.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACTATTGCCGGGGGAAA
R:
TGTTCTTCTTGTACATCAGGATTTCA
Band lengths:
186-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]