RnoEX0046012 @ rn6
Exon Skipping
Gene
ENSRNOG00000003841 | Kcnh1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RGD Symbol;Acc:68398]
Coordinates
chr13:110920737-110951029:+
Coord C1 exon
chr13:110920737-110921023
Coord A exon
chr13:110947672-110947795
Coord C2 exon
chr13:110950923-110951029
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCTTTTTGAAACAGACA
3' ss Score
8.18
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GGCACTCGAGCGCACACCCGGGCGGGCCGCAGCGGAGAGGTGCGGAGCGCAGCGAAGCGGCAGCGGGAGCTAGCCGCCGCCCCTGCGCTCCGGGGCTGCGGGGCGCATGGGGCGCGTGGAGCCGGGAACACTCGCGGGTTGCGCACCCGGCCGCCTGCTGCGGTGAGACACGGCGCCGGACGCCCCCAGAGCCCCAGCAGTAGGGAGGATGACCATGGCTGGCGGCCGGCGGGGACTAGTGGCCCCGCAGAACACATTTCTGGAGAACATCGTGCGGCGGTCCAACG
Seq A exon
ACACTAATTTTGTGTTGGGGAATGCCCAGATCGTGGACTGGCCCATCGTGTACAGCAATGATGGATTCTGCAAGCTGTCTGGCTACCACCGAGCGGAAGTGATGCAAAAGAGTAGCGCCTGCAG
Seq C2 exon
TTTTATGTATGGAGAGCTGACCGACAAGGACACGGTTGAAAAGGTTCGCCAGACCTTTGAGAACTACGAGATGAACTCCTTCGAAATTCTGATGTACAAGAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003841-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
60%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(35.8=90.5)
C2:
PF134261=PAS_9=FE(34.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGCCGGGAACACTC
R:
TCGTAGTTCTCAAAGGTCTGGC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]