DreEX6099964 @ danRer10
Exon Skipping
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37949238-37956242:+
Coord C1 exon
chr22:37949238-37949310
Coord A exon
chr22:37953850-37953973
Coord C2 exon
chr22:37956136-37956242
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTCGCTTCCTGGCAGACA
3' ss Score
7.91
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
ATGGCGGGGGGACGCAGAGGACTGGTGGCCCCTCAGAACACATTCCTGGAGAATATAGTGCGGCGCTCCAACG
Seq A exon
ACACCAATTTTGTTTTGGGGAACGCCCAGATTGTGGACTGGCCGATCGTCTACAGTAATGACGGATTCTGCAAGCTGTCCGGTTACCATCGTGCTGAAGTCATGCAGAAGAGCAGCACATGCAG
Seq C2 exon
CTTCATGTACGGGGAACTTTCTGACAAAGAAACCAGTGAGAAACTCCGCCAGACCTTCGAGAACTACGAGATGAACTCCTTTGAGTTACTGATGTACAAGAAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(35.8=90.5)
C2:
PF134261=PAS_9=FE(34.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGCAGAGGACTGGT
R:
GGTTCTTCTTGTACATCAGTAACTCA
Band lengths:
172-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]