MmuEX6030133 @ mm10
Exon Skipping
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:192190774-192224951:+
Coord C1 exon
chr1:192190774-192191086
Coord A exon
chr1:192221333-192221456
Coord C2 exon
chr1:192224845-192224951
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTTTTTGACATAGACA
3' ss Score
8.12
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGGCGGCCGCGGCGCACCGAGCCCGGGGCACTCGAGCGCACACCCGGGCGGGCCGCAGCGGGGAGGTGCGGAGCGCAGCGAGGGCGGCAGCGGGAGCCAGCCGCCGCCCCTGCGCTCCGGGGCTGCGGAGCGCATGGGGCGCGTGGAGCCAGGAACGCTTGCGGGCTGCGCACCCGGCCGCCTGCTGCGGTGAGACACGGCGCCGGACGCCCCCAGAGTCCGGCAGTCGGGAGGATGACCATGGCTGGCGGCCGGCGGGGACTAGTGGCCCCGCAGAACACGTTTCTGGAGAACATCGTGCGGCGGTCCAACG
Seq A exon
ACACTAATTTTGTGTTGGGGAATGCCCAGATAGTCGACTGGCCCATCGTGTACAGCAATGATGGATTCTGCAAGCTGTCTGGCTACCACCGGGCAGAAGTGATGCAGAAAAGCAGCGCCTGCAG
Seq C2 exon
TTTTATGTATGGAGAGCTGACTGACAAGGACACAGTTGAAAAGGTTCGCCAGACCTTTGAGAACTACGAGATGAATTCCTTCGAAATTCTGATGTACAAGAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248-'1-6,'1-0,3-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(35.8=90.5)
C2:
PF134261=PAS_9=FE(34.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCCAGGAACGCTTG
R:
TCTCGTAGTTCTCAAAGGTCTGG
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types