MmuEX6030133 @ mm9
Exon Skipping
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:194014666-194048833:+
Coord C1 exon
chr1:194014666-194014968
Coord A exon
chr1:194045215-194045338
Coord C2 exon
chr1:194048727-194048833
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTTTTTGACATAGACA
3' ss Score
8.12
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGCGCACCGAGCCCGGGGCACTCGAGCGCACACCCGGGCGGGCCGCAGCGGGGAGGTGCGGAGCGCAGCGAGGGCGGCAGCGGGAGCCAGCCGCCGCCCCTGCGCTCCGGGGCTGCGGAGCGCATGGGGCGCGTGGAGCCAGGAACGCTTGCGGGCTGCGCACCCGGCCGCCTGCTGCGGTGAGACACGGCGCCGGACGCCCCCAGAGTCCGGCAGTCGGGAGGATGACCATGGCTGGCGGCCGGCGGGGACTAGTGGCCCCGCAGAACACGTTTCTGGAGAACATCGTGCGGCGGTCCAACG
Seq A exon
ACACTAATTTTGTGTTGGGGAATGCCCAGATAGTCGACTGGCCCATCGTGTACAGCAATGATGGATTCTGCAAGCTGTCTGGCTACCACCGGGCAGAAGTGATGCAGAAAAGCAGCGCCTGCAG
Seq C2 exon
TTTTATGTATGGAGAGCTGACTGACAAGGACACAGTTGAAAAGGTTCGCCAGACCTTTGAGAACTACGAGATGAATTCCTTCGAAATTCTGATGTACAAGAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(35.8=90.5)
C2:
PF134261=PAS_9=FE(34.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCCAGGAACGCTTG
R:
TCTCGTAGTTCTCAAAGGTCTGG
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: