GgaEX0019948 @ galGal3
Exon Skipping
Gene
ENSGALG00000013235 | PDK1
Description
NA
Coordinates
chr7:19078455-19079776:-
Coord C1 exon
chr7:19079699-19079776
Coord A exon
chr7:19078959-19079035
Coord C2 exon
chr7:19078455-19078553
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTAGACTTTCTTTTCTGCAGTTA
3' ss Score
7.05
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATGGTTATGAAAGTGCCAAGAGTCTTTGTGATTTGTATTATATGAGCTCTCCAGAACTTGTCCTAGAAGAGTTGAATA
Seq A exon
TTAAATCACCAGGACAGCCCATGCAAGTGGTGTATGTGCCGTCCCACCTCTATCACATGGTTTTCGAACTTTTCAAG
Seq C2 exon
AATGCAATGAGAGCCACCATGGAACATAATGCTGATCGATGCATTTATCCTCCAATTCATGTACATGTCACCTTGGGAAATGAGGATTTAACTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013235-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0251821=HATPase_c=PU(11.2=53.8)
C2:
PF0251821=HATPase_c=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTATGAAAGTGCCAAGAGTCT
R:
AAATCCTCATTTCCCAAGGTGACA
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]