GgaEX0020909 @ galGal3
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
NA
Coordinates
chr1:70783293-70823965:-
Coord C1 exon
chr1:70823849-70823965
Coord A exon
chr1:70803354-70803470
Coord C2 exon
chr1:70783293-70783415
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTTCATTCTGCAGAAA
3' ss Score
11.54
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
TAACCTGTAACTATGGGAATGGAGGCTGCCAGCACACCTGTGATGACACTGATACTGGTCCTGTGTGTGGTTGTCATCAGAAGTATGCCCTGCATTCAGATGGACGAACCTGCATTG
Seq A exon
AAACATGTGCTGTCAATAATGGAGGCTGTGATCGGACTTGCAAGGATACCGCGACAGGGGTACGATGCAGTTGCCCAGTTGGATTTACCCTGCAGCCTGATGGGAAAACGTGCAAAG
Seq C2 exon
ATATTGATGAGTGCTTGGTAAACAATGGTGGCTGTGACCATTTCTGCCGAAACACAGTTGGCAGCTTTGAATGCAGCTGCCAGAAAGGCTATAAACTACTCACAGATGAACGGACCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'4-7,'4-6,6-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTAACTATGGGAATGGAGGC
R:
TGACAGGTCCGTTCATCTGTG
Band lengths:
235-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]