MmuEX6055289 @ mm9
Exon Skipping
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83465101-83484715:-
Coord C1 exon
chr15:83484599-83484715
Coord A exon
chr15:83469134-83469250
Coord C2 exon
chr15:83465101-83465223
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCTCCCCTCCCCAGAGA
3' ss Score
10.84
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
TAACCTGTAACTATGGAAACGGAGGCTGTCAGCACAGCTGCGAGGACACGGACACGGGCCCCATGTGTGGCTGCCACCAGAAGTACGCCTTACATGCAGATGGTCGGACGTGCATCG
Seq A exon
AGACATGTGCAGTGAACAACGGAGGCTGTGACCGGACGTGTAAGGACACTGCCACTGGCGTGCGGTGCAGCTGCCCGGTTGGATTCACGCTGCAGCCAGATGGAAAGACATGCAAAG
Seq C2 exon
ACATCAACGAGTGCTTGATGAATAACGGAGGCTGCGACCACTTCTGCCGAAACACCGTGGGCAGCTTTGAATGCGGCTGCCAAAAGGGCCACAAGCTACTGACGGACGAGCGGACATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763-'5-7,'5-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTAACTATGGAAACGGAGGC
R:
CTTGGCATGTCCGCTCGTC
Band lengths:
237-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: