GgaEX6026975 @ galGal4
Exon Skipping
Gene
ENSGALG00000002675 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr26:4089080-4093400:-
Coord C1 exon
chr26:4093275-4093400
Coord A exon
chr26:4092391-4092507
Coord C2 exon
chr26:4089080-4089127
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGCGCTTTGTCCTCCTCAGTGA
3' ss Score
9.09
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
AAGGAATGAACTGCATGAACAAGAACCACGGCTGTGCCCACATCTGCCGAGAGACCCCCAAGGGGGGCATCGCCTGCGAGTGCCGCCCGGGCTTTGAGCTCACCAAGAACCAACGCGACTGCAAAC
Seq A exon
TGACGTGCAACTATGGGAACGGCGGCTGCCAGCACACCTGTGATGACACGGACCAGGGCCCCAAGTGTGGCTGCCACGTCAAGTTCTTGCTGCACTCCGACGGCGTCACCTGCATAG
Seq C2 exon
GGGAGAGACACTTCCAGCAACACGTTATCCTTGAGACGTTTTCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-'4-7,'4-5,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATGAACTGCATGAACAAGA
R:
AGAAAACGTCTCAAGGATAACGTGT
Band lengths:
170-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]