BtaEX6097114 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009226 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr23:9151470-9156441:+
Coord C1 exon
chr23:9151470-9151595
Coord A exon
chr23:9151767-9151883
Coord C2 exon
chr23:9156325-9156441
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGCATGCCCTCTCTGCACAGTGA
3' ss Score
7.02
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
Exon sequences
Seq C1 exon
AAGGAATGAACTGCATGAACAAGAACCATGGCTGTGCTCACATCTGCCGGGAGACACCCAAAGGGGGTATTGCCTGTGAATGCCGCCCTGGCTTCGAGCTCACCAAGAACCAACGGGACTGTAAAT
Seq A exon
TGACCTGCAACTATGGCAACGGTGGCTGCCAGCACACGTGCGACGACACGGAGCAGGGGCCCCGGTGCGGCTGCCACGTCAAGTTTGTGCTCCACACCGACGGGAAGACGTGCATCG
Seq C2 exon
AGACCTGTGCTGTCAACAACGGGGGCTGCGACAGCAAGTGCCACGATGCAGCGACGGGCGTCCACTGCAGCTGCCCTGTGGGCTTCATGCTGCAGCCAGACAGGAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009226-'10-9,'10-7,11-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGAACTGCATGAACAAGA
R:
GTCTTCCTGTCTGGCTGCAG
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]