RnoEX6061970 @ rn6
Exon Skipping
Gene
ENSRNOG00000000500 | Scube3
Description
signal peptide, CUB domain and EGF like domain containing 3 [Source:RGD Symbol;Acc:1304880]
Coordinates
chr20:7731723-7735854:+
Coord C1 exon
chr20:7731723-7731848
Coord A exon
chr20:7732028-7732144
Coord C2 exon
chr20:7735738-7735854
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTCCCTCTGTGCAGTGA
3' ss Score
9.52
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
AAGGAATGAACTGCATGAACAAGAACCACGGCTGTGCCCACATTTGCCGGGAGACTCCGAAGGGGGGCATTGCCTGTGAATGCCGCCCTGGCTTCGAGCTCACCAAGAACCAACGGGACTGTAAAT
Seq A exon
TGACCTGCAACTACGGTAACGGTGGCTGCCAGCACACATGCGATGACACAGAGCAGGGTCCTCGGTGCGGCTGCCACGTCAAGTTTGTGCTCCATACGGACGGAAAGACATGCATTG
Seq C2 exon
AGACCTGTGCCGTCAACAACGGAGGCTGTGACAGTAAGTGTCACGATGCAGCGACCGGCGTCCACTGCAGCTGCCCTGTGGGTTTCATGCTGCAGCCAGACAGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000500-'6-9,'6-6,7-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATGAACTGCATGAACAAGA
R:
TTTGCAGGTCTTTCTGTCTGGC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]