GgaEX6026975 @ galGal3
Exon Skipping
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3975910-3983084:-
Coord C1 exon
chr26:3982959-3983084
Coord A exon
chr26:3982075-3982191
Coord C2 exon
chr26:3975910-3976026
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGCGCTTTGTCCTCCTCAGTGA
3' ss Score
9.09
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
AAGGAATGAACTGCATGAACAAGAACCACGGCTGTGCCCACATCTGCCGAGAGACCCCCAAGGGGGGCATCGCCTGCGAGTGCCGCCCGGGCTTTGAGCTCACCAAGAACCAACGCGACTGCAAAC
Seq A exon
TGACGTGCAACTATGGGAACGGCGGCTGCCAGCACACCTGTGATGACACGGACCAGGGCCCCAAGTGTGGCTGCCACGTCAAGTTCTTGCTGCACTCCGACGGCGTCACCTGCATAG
Seq C2 exon
AGACCTGTGCTGTGAACAACGGGGGCTGTGACAGCAAGTGTCACGACGCGGCCACCGGCGTGCACTGCAGCTGCCCCATGGGCTTCATGCTGCAGCCCGACAGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-'4-6,'4-4,5-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATGAACTGCATGAACAAGA
R:
TTTGCAGGTCTTTCTGTCGGG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]