HsaEX6046800 @ hg19
Exon Skipping
Gene
ENSG00000146197 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:13655]
Coordinates
chr6:35200627-35203270:+
Coord C1 exon
chr6:35200627-35200752
Coord A exon
chr6:35200962-35201078
Coord C2 exon
chr6:35203223-35203270
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCTCTCTGTGCACAGTGA
3' ss Score
10.13
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
Exon sequences
Seq C1 exon
AAGGAATGAATTGCATGAACAAGAACCACGGCTGTGCCCACATTTGCCGGGAGACACCCAAGGGGGGTATTGCCTGTGAATGCCGTCCTGGCTTTGAGCTTACCAAGAACCAACGGGACTGTAAAT
Seq A exon
TGACATGCAACTATGGTAACGGCGGCTGCCAGCACACGTGTGATGACACAGAGCAGGGTCCCCGGTGCGGCTGCCATATCAAGTTTGTGCTCCATACCGACGGGAAGACATGCATCG
Seq C2 exon
GGGAAAGGCGGCTAGAGCAGCACATCCCCACTCAAGCCGTTTCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146197-'7-9,'7-7,8-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGAATTGCATGAACAAGAACC
R:
TAGAAACGGCTTGAGTGGGGA
Band lengths:
170-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)