MmuEX6076358 @ mm10
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28156762-28160928:+
Coord C1 exon
chr17:28156762-28156887
Coord A exon
chr17:28157073-28157189
Coord C2 exon
chr17:28160812-28160928
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATGTCTCCTCTCTGTGCAGTGA
3' ss Score
9.76
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
AAGGAATGAACTGCATGAACAAGAACCACGGCTGTGCCCACATTTGCCGGGAGACTCCCAAGGGGGGCATTGCCTGTGAATGCCGCCCTGGCTTCGAGCTCACCAAGAACCAACGGGACTGTAAAT
Seq A exon
TGACCTGCAACTATGGTAATGGCGGCTGCCAGCACACCTGCGATGACACGGAGCAGGGTCCTCGGTGCGGCTGCCACGTCAAGTTTGTGCTCCACACCGACGGGAAGACATGCATTG
Seq C2 exon
AAACCTGTGCTGTCAACAACGGAGGCTGCGACAGTAAGTGCCATGATGCAGCGACCGGAGTCCACTGCAGCTGTCCTGTGGGTTTCATGCTGCAGCCAGACAGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677-'6-18,'6-8,9-18=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATGAACTGCATGAACAAGA
R:
TTTGCAGGTCTTTCTGTCTGGC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types