RnoEX6033276 @ rn6
Exon Skipping
Gene
ENSRNOG00000010617 | Scube1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:RGD Symbol;Acc:1309015]
Coordinates
chr7:124530570-124547485:-
Coord C1 exon
chr7:124547396-124547485
Coord A exon
chr7:124534530-124534646
Coord C2 exon
chr7:124530570-124530692
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCTCCCCTCCCCAGAGA
3' ss Score
11.76
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAAGGATGAGGCTGCAATTGAGCGCTCTCAGTTCAATGCCACGTCAGTAGCTGATGTGGACAAGCGTGTGAAACGGCGGCTCCTCATGG
Seq A exon
AGACGTGTGCGGTGAACAACGGAGGCTGTGACCGGACGTGTAAGGACACTGCCACCGGCGTGAGATGCAGCTGCCCAGTTGGATTCACGCTACAGCCGGATGGAAAGACATGCAAAG
Seq C2 exon
ACATCAACGAGTGCTTGATGAACAACGGAGGCTGCGACCACTTCTGCCGAAACACTGTGGGCAGCTTTGAATGCGGCTGCCAAAAGGGCCACAAGCTACTGACGGACGAGCGGACATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010617-'11-11,'11-10,13-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGAGGCTGCAATTGAGC
R:
CTTGGCATGTCCGCTCGTC
Band lengths:
210-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]